SLiMSuite & SeqSuite: open-source bioinformatics in Python

A blog of all things pertaining to the SeqSuite & SLiMSuite open-source bioinformatics packages, their authors and applications.

Wednesday, 14 May 2014

SLiMSuite Short Linear Motif discovery and analysis: Minor bug in GOPHER output with BLAST+

SLiMSuite Short Linear Motif discovery and analysis: Minor bug in GOPHER output with BLAST+: A bug has been identified with the current SLiMSuite release when using BLAST+ to generate orthologue alignments with GOPHER. Sequences extr...
Posted by Richard Edwards at 13:28 No comments:
Email ThisBlogThis!Share to XShare to FacebookShare to Pinterest
Newer Posts Older Posts Home
Subscribe to: Posts (Atom)

Documentation

  • Installation & Setup
  • Getting Help
  • Command-line Options
  • External Components of SeqSuite
  • Log Files

Links

  • Downloads
  • Bioware servers
  • Edwards Lab
  • Old Homepage
  • Rich's Blog

Contributors

  • Niall Haslam
  • Richard Edwards
  • seqsuite

Followers

Blog tags

affiliations (1) applications (1) bioware (7) blast (1) blog (3) BUDAPEST (1) bugs (4) CompariMotif (6) conferences (4) cytoscape (1) documentation (10) downloads (16) GABLAM (1) GOPHER (3) help (1) jobs (2) logs (1) methods (1) news (21) phage display (1) posters (3) publications (4) QSLiMFinder (10) SeqSuite (17) server (7) settings (1) SLiMDisc (2) SLiMFinder (5) SLiMMaker (5) SLiMPred (1) SLiMPrints (2) SLiMProb (1) SLiMSearch (3) SLiMSuite (31) tools (14) troubleshooting (3) unsw (1) updates (4) visualisation (1) website (9)

Blog Archive

  • ▼  2014 (7)
    • ►  June (2)
    • ▼  May (1)
      • SLiMSuite Short Linear Motif discovery and analysi...
    • ►  April (3)
    • ►  January (1)
  • ►  2013 (22)
    • ►  December (2)
    • ►  November (2)
    • ►  August (8)
    • ►  July (5)
    • ►  April (4)
    • ►  March (1)
  • ►  2012 (19)
    • ►  December (1)
    • ►  November (3)
    • ►  October (1)
    • ►  September (1)
    • ►  August (6)
    • ►  July (1)
    • ►  June (1)
    • ►  May (2)
    • ►  April (2)
    • ►  January (1)
  • ►  2011 (2)
    • ►  November (2)

Subscribe To

Posts
Atom
Posts
All Comments
Atom
All Comments

Popular Posts

  • Using SLiMFinder on Phage Display Data (or other peptides)
    Although SLiMFinder is designed with whole protein sequences in mind, it can also be used to identify statistically over-represented motifs ...
  • New software downloads now available
    Updated software packages for SeqSuite, SLiMSuite and RJESuite  are now available from the  Edwards Lab software  page. These downloads inco...
  • New downloads and fixed webpages
    New releases of SeqSuite and SLiMSuite are now available. The webpages have now hopefully been fixed too, including the broken Manual link...
  • New SLiMSuite Blog
    This Blog has now been retired. Please visit the new SLiMSuite blog (and update any bookmarks).
  • SLiMMaker: regular expressions from aligned peptide sequences
    SLiMMaker has a fairly simple function of reading in a set of sequences and generating a regular expression motif from them. It is designed...
  • SLiMSuite 2014-04-22 now available
    A new download of SLiMSuite (release 2014-04-22) is now available. As well as fixing the gopher.py error, the download page and readme ha...
  • SLiMMaker now handles end of sequence characters
    SLiMMaker is a simple tool for generating regular expression motifs from aligned peptide sequences. It was originally made for making new S...
  • File management for large SLiMSuite runs
    The latest release of SLiMSuite features a slight modification to the way that files are generated and tidied, which can be beneficial for...
  • Welcome!
    Welcome to the new blog for, SLiMSuite, SeqSuite and associated open-source python gubbins. Due to a recent overhaul of file organisation, t...
  • QSLiMFinder 1.4: quicker and more efficient - available on request
    The on-going benchmarking of QSLiMFinder has thrown up a couple of discoveries to date. The first is that, reassuringly, it appears to work....

Disclaimer

All comments and opinions on this blog represent those of the authors and do not represent views or positions held by The University of Southampton, University College Dublin, EMBL, or any other official institutions affiliated with this project.
Powered by Blogger.