The recent
fixing up of the server has highlighted a couple of bugs that have crept in during the upgrading of CompariMotif to handle complex motifs better. (More on this in a later post.)
The problem is restricted to
lower case motifs, so stick to upper case and all will be well. It will be fixed in the next release. A replacement rje_slimlist.py file is available on request if anyone needs to fix it urgently. (This also features replacement of "?" characters with "{0,1}" so these motifs are no longer rejected.)
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